GreatMod - How to install

Docker

You need to have docker installed on your machine, for more info see this document: https://docs.docker.com/engine/installation/.

Ensure your user has the rights to run docker (witout the use of sudo). To create the docker group and add your user:

  • Create the docker group.
  $ sudo groupadd docker
  • Add your user to the docker group.
  $ sudo usermod -aG docker $USER
  • Log out and log back in so that your group membership is re-evaluated.

GreatSPN

The installation of the workflow requires the downloading of the last version of the GreatSPN editor.

EPIMOD

To install EPIMOD you can use use devtools:

install.packages("devtools")
library(devtools)
install_github("https://github.com/qBioTurin/epimod", ref="master")

Download Containers:

To download all the docker images exploited by EPIMOD you can use:

library(epimod)
downloadContainers()